2008

Mezey, J. G., S. V. Nuzhdin, F.F. Yu, and C. D. Jones. 2008. Co-expression domains : units of evolution in the Drosophila transcriptome. BMC Evolutionary Biology. In press.

2007

Begun, D.J., A. K. Holloway, K. Stevens, L W. Hillier, Y-P Poh, M. W. Hahn, P. M. Nista, C. D. Jones, A. D. Kern, C. Dewey, L. Pachter, E. Myers, and C.H. Langely. 2007 Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. PLoS Biology. 5(11):e310.

Drosophila 12 Genomes Consortium. 2007. Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-218.

Gabriel W N., R McNuff, S. K. Patel, T. R. Gregory, W. R. Jeck, C. D. Jones and B. Goldstein 2007. The Tardigrade Hypsibius dujardini, a New Model for Studies on the Evolution of Development. Developmental Biology. Dev Biol. Oct 6; [Epub ahead of print]

Jeck, W. R. , J. A. Reinhardt, D. A. Baltrus, M. T. Hickenbotham, V. Magrini, E. R. Mardis, J. L. Dangl, and C. D. Jones. 2007. Applications Note: Extending assembly of short DNA sequences to handle error through VCAKE. Bioinformatics. 23(21):2942-4.

Holloway, A.K., M.L. Lawniczak, D. J. Begun, J. G. Mezey, and C. D. Jones. 2007. Genome-wide comparison of structural and transcriptional divergence among Drosophila melanogaster, D. simulans, and D. yakuba. PLoS Genetics 3(10):2007-13.

Begun D. J., A. D. Kern, H. A. Lindfors, & C. D. Jones. 2007. Rapid evolution and turnover of testis-expressed genes in the Drosophila yakuba/D. erecta lineage. Genetics. 176:1131-7.

2006

Masly, J. P., C. D. Jones, M. A.F. Noor, J. Locke & H. A. Orr. 2006. Gene transposition as a novel cause of hybrid sterility in Drosophila. Science. 313:1448-1450.

Levine, M. T., C. D. Jones, A. D. Kern, H. A. Lindfors, & D. J. Begun. Novel genes derived from non-coding DNA in Drosophila melanogaster are chromosome and sex biased. Proc Natl Acad Sci USA 103:9935-9.

2005

Jones C. D. and D. J. Begun. 2005. Parallel evolution of chimeric fusion genes. PNAS. 102:11373-8.

Jones C. D. A. W. Custer, and D. J. Begun. 2005. Origin and evolution of a chimeric fusion gene in Drosophila subobscura, Drosophila madeirensis, and Drosophila guanche. Genetics 170: 207-19.

Danzinger, R.S., and C. D. Jones. 2005. A time to reconsider our collaborations with the Dahl rat. Current Hypertension Reviews. 1(2)  [in press]

Jones, C. D. 2005. The genetics of adaptations in Drosophila sechellia. Genetica. 123:137-145.  [also featured in The Georgia Genetics Review.  Vol. 3.  Kluwer Academic Publishing, New York.]

2004

Jones, C. D. 2004. The genetics of egg production in Drosophila sechellia.  Heredity 92:235-41.

Kern, A.D., C. D. Jones, and D. J. Begun. 2004.  Molecular population genetics of male accessory gland proteins in the Drosophila simulans complex.  Genetics.  167 (2): 715-35.