2  // number of runs - duplicate the sequence below for each run



0.90000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.10000
0.10000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.90000 //run 1  These two lines are the starting frequencies on island 1 (top) and island 2 (bottom) of the T1N1M1, T1N1M2, T1N2M1, T1N2M2, T2N1M1, T2N1M2, T2N2M1, T2N2M2 genotypes
0.001000					// starting frequency of the A2 allele across both islands
0.01 0.01 					// st on island 1, st on island 2
0.01 0.01					// sE for N1M1, sE for N2M2
0.001						// migration rate m between the islands
1.00 1.01					// preference of A1 females for males that share their T allele, preference of A2 females for males that share their T allele
1.00 1.01					// preference of A1 females for males that share their NM genotype, preference of A2 females for males that share their NM genotype
0.500000 0.500000 0.500000 	// recombination rates rmn, rmt, rtp
20000 2000 10000000			// maximum number of generations after A2 is added, how often in generations to print to a file, how often in generations to print to the screen before A2 is added

0.90000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.10000
0.10000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.90000 //run 1  These two lines are the starting frequencies on island 1 (top) and island 2 (bottom) of the T1N1M1, T1N1M2, T1N2M1, T1N2M2, T2N1M1, T2N1M2, T2N2M1, T2N2M2 genotypes
0.001000					// starting frequency of the A2 allele across both islands
0.01 0.01 					// st on island 1, st on island 2
0.01 0.01					// sE for N1M1, sE for N2M2
0.001						// migration rate m between the islands
1.00 2.00					// preference of A1 females for males that share their T allele, preference of A2 females for males that share their T allele
1.00 2.00					// preference of A1 females for males that share their NM genotype, preference of A2 females for males that share their NM genotype
0.500000 0.500000 0.500000 	// recombination rates rmn, rmt, rtp
20000 2000 10000000			// maximum number of generations after A2 is added, how often in generations to print to a file, how often in generations to print to the screen before A2 is added